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Case study: Extracting tidy data from Open Targets Genetics with Otargen

The Open Targets Blog

Amir Feizi is the Director of Bioinformatics at OMass Therapeutics, a spinout from Professor Dame Carol Robinson’s Laboratory at the University of Oxford. Their work was recently published in Bioinformatics. We chat with him about otargen, and the importance of sharing open-source resources within the bioinformatics community.

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What Do Molecules That Look LIke This Tend To Do?

Practical Cheminformatics

One such collection is the ChEMBL database maintained by the European Bioinformatics Institute (EBI). One of the easiest and fastest with a database like ChEMBL is to use the FPSim2 package, developed by the group at the EBI that maintains the ChEMBL database. Searching ChEMBL There are several ways of performing similarity searches.