The Open Targets Blog
JANUARY 30, 2025
“Sam has an exceptional talent in software engineering, and his contributions reflect a deep understanding of both the technical and biological aspects required for bioinformatics tool development,” says Laura Luebbert, now a postdoctoral fellow in the Sabeti lab at the Broad Institute of MIT and Harvard and Harvard University.
The Open Targets Blog
OCTOBER 24, 2023
Amir Feizi is the Director of Bioinformatics at OMass Therapeutics, a spinout from Professor Dame Carol Robinson’s Laboratory at the University of Oxford. Their work was recently published in Bioinformatics. We chat with him about otargen, and the importance of sharing open-source resources within the bioinformatics community.
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Broad Institute
FEBRUARY 21, 2024
We’re reusing open-source software that other people have built and adapting it to further bioinformatic science. I’ll say I’m excited about interactive visualizations, which are built on top of open source plotting packages such as R. And we keep on building new knowledge. It’s an exciting time.
Practical Cheminformatics
JANUARY 8, 2024
A Tutorial on Encoding and Generating Small Molecules with COATI [link] COATI: multi-modal contrastive pre-training for representing and traversing chemical space [link] The team at AstraZeneca released version 4 of their software package REINVENT for generative design.
Practical Cheminformatics
OCTOBER 31, 2020
One such collection is the ChEMBL database maintained by the European Bioinformatics Institute (EBI). One of the easiest and fastest with a database like ChEMBL is to use the FPSim2 package, developed by the group at the EBI that maintains the ChEMBL database. Searching ChEMBL There are several ways of performing similarity searches.
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