Remove Drugs Remove Engineering Remove Fragment Screening
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Silly Things Large Language Models Do With Molecules

Practical Cheminformatics

While there was a slight chance that my roommates, with no chemistry knowledge, could have accidentally created the structure of a blockbuster drug, it was highly improbable. These fragment hits are small molecules with between 11 and 21 heavy atoms. My usual response was, "Something that could never exist."

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Why fragments?

Molecular Design

Paramin panorama Crystallographic fragment screens have been run recently against the main protease (at Diamond ) and the Nsp3 macrodomain (at UCSF and Diamond ) of SARS-Cov-2 and I thought that it might be of interest to take a closer look at why we screen fragments.

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Tom Lehrer's guide to design of SARS-CoV-3 main protease inhibitors for treatment of COVID-32

Molecular Design

> It’s been ages since my last COVID-19 post (How not to repurpose a 'drug') and I’ll kick blogging off for 2021 with a follow up to an even older post (SARS-CoV-2 main protease. Crowdsourcing, peptidomimetics and fragments). Pfizer began a phase I study of the SARS-CoV-2 main protease inhibitor PF-00835321 (K i = 0.27